A
mitochondrion (source). Is mitochondrial DNA selectively neutral?
Were Ice
Age Europeans a dead end, like the Neanderthals before them? Did Middle Eastern
farmers replace indigenous hunter-gatherers, just as Europeans would later
replace native Indians in North America?
This debate
has been raging back and forth for some time, but it has now entered a new
phase with retrieval of mtDNA from ancient European skeletons. We can now
genetically compare late hunter-gatherers with early farmers. We can now ask
the question: Which of them were the ancestors of modern Europeans?
This kind
of comparison has recently been made in Sweden, where farming replaced
hunting/gathering/fishing some 5,000 years ago. This is the time depth for mtDNA
retrieved from two burial sites: a farming community in Gökhem
parish (one individual)
and a hunter-gatherer community on the island of Gotland (three individuals).
The results?
The Neolithic hunter-gatherers shared
most alleles with northern Europeans, and the lowest allele sharing was with
populations from southeastern Europe. In contrast, the Neolithic farmer shared
the greatest fraction of alleles with southeastern European populations
(Cypriots and Greeks) and showed a pattern of decreasing genetic similarity to
populations from the northwest and northeast extremes of Europe (Skoglund etal., 2012)
The authors
then went on to estimate the degree of admixture from Middle Eastern farmers in
present-day Europeans:
We estimated that people of southern,
central and northern Swedish descent are, on average, of 41 ± 8%, 36 ± 7%, and
31 ± 6% Neolithic farmer–related ancestry, respectively (±1 SE). Across Europe,
this fraction decreases from 95 ± 13% in Sardinians to 52 ± 8% in the CEU
population (individuals of northwestern European descent) and 11 ± 4% in
Russians (Skoglund et al., 2012)
So,
according to this study, northern Europeans are mainly descended from the hunter-gatherers
of Ice Age Europe. But there is also substantial admixture from those Middle
Eastern farmers—roughly a third of the present-day Swedish gene pool.
Is this the
last word? No, the debate will surely continue. For one thing, the sample sizes
are still small. For another, the replacement of hunter-gatherers by farmers
may have played out differently in different places.
But there
is a more fundamental objection. All of this assumes that we have a reliable
yardstick for measuring admixture. For this to be so, mtDNA must not be
influenced by natural selection. In particular, it must not be influenced by
the change in selection pressures that occurs when hunting and gathering give
way to farming. Is this assumption valid?
When we
compare late hunter-gatherers with present-day Europeans, the main change to
mtDNA is the loss of haplogroup U. Indeed, if this haplogroup had not declined
to its current low levels, the above admixture estimates would be minimal.
Today,
haplogroup U reaches high levels only among the Saami of Finland and the Mansi
of northwestern Siberia, both of whom were hunter-gatherers until recently
(Derbeneva et al, 2002). Did something about that lifestyle favor this
haplogroup?
Balloux et
al. (2009) have argued that some haplogroups create different trade-offs
between thermogenesis and ATP synthesis. In particular, haplogroup U is
associated with reduced sperm motility—an indication that the energy balance is
shifted from producing ATP to producing heat:
The
ATP that drives the sperm flagella is derived from the mitochondria located in
the midpiece. Therefore, mutations in the mtDNA which increase or decrease ATP
production will be reflected in increased or decreased sperm motility.
[…]
Therefore, shifting the energy balance from primarily ATP production to
increased heat production could explain the lower sperm motility and the
predilection of these sublineages U to reside in colder climates and their
northern distribution. (Montiel-Sosa et al., 2006)
Being
nomadic, hunter-gatherers spent more time in the cold, especially when sleeping
in temporary shelters. Farming brought more sedentary living and a generally
warmer sleeping environment. There would thus have been weaker natural
selection for genetic variants, like haplogroup U, that maintain a higher body
temperature at the expense of lower ATP production.
This
hypothesis is testable. If haplogroup U disappeared because Middle Eastern
farmers partially replaced native hunter-gatherers, this genetic change should
largely coincide with the time boundary between late hunter-gatherers and early
farmers. If this haplogroup disappeared through natural selection, the change
should have occurred gradually over a longer period.
The second
scenario seems closer to the truth. In a study of 92 Danish human remains that ranged in time
from the Mesolithic to the Middle Ages, Melchior et al. (2010) found that high
incidences of haplogroup U persisted long after the advent of farming and
apparently as late as the Early Iron Age.
References
Balloux F., L.J. Handley, T. Jombart, H. Liu,
and A. Manica (2009). Climate
shaped the worldwide distribution of human mitochondrial DNA sequence variation.
Proceedings. Biological Sciences, 276, (1672), 3447–55.
Derbeneva, O.A., E.B. Starikovskaya, D.C. Wallace, & R.I. Sukernik. (2002). Traces of
early Eurasians in the Mansi of Northwest Siberia revealed by mitochondrial DNA
analysis, Am. J. Hum. Genet. 70:1009–1014.
Melchior, L., N. Lynnerup,
H.R. Siegismund, T. Kivisild, J. Dissing. (2010). Genetic diversity among
ancient Nordic populations, PLoS ONE, 5(7): e11898
Montiel-Sosa,
F., E. Ruiz-Pesini, J.A. Enríquez, A. Marcuello, C. Díez-Sánchez, J. Montoya,
D.C. Wallace, & M.J. López-Pérez. (2006). Differences of sperm
motility in mitochondrial DNA haplogroup U sublineages, Gene, 368,
21–27.
Skoglund, P., H. Malmström, M. Raghavan, J. Storå, P. Hall, E. Willerslev, M.T. Gilbert, A. Götherström, & M. Jakobsson. (2012). Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe, Science, 336, 466-469.




